title scientific data descriptor

The HEAR-EU Multiscale Imaging and Modelling Dataset of the Human Inner Ear

Welcome to the Cochlea Data Descriptor site. This is the landing page for downloading the Data descriptor, which can be found here: <URL descriptor to be filled once it is published> In case of enquiries please do not hesitate to contact us at: mauricio.reyes@istb.unibe.ch

cochlea anatomy

Abstract

Understanding the anatomy of the human inner ear and its internal structures is paramount to advance hearing implant technology.

While the emergence of imaging devices allowed researchers to improve understanding of intracochlear structures, study its anatomical variability and develop functional models, the difficulties to collect appropriate data has resulted in studies conducted with few samples. This data descriptor, therefore, describes a rich set of image volumes of preserved human temporal bones acquired using cone beam computed tomography (CT) and micro-CT modalities, accompanied by manual delineations of the cochlea and sub-compartments, a statistical shape model encoding its anatomical variability, and data for electrode insertion and electrical simulations. This data makes an important asset for future studies in need of high-resolution data and related statistical data objects of the cochlea used to leverage scientific hypotheses. It is of relevance to anatomists, audiologists, computer scientists in the different domains of image analysis, computer simulations, and imaging formation, as well as for biomedical engineers designing new strategies for cochlear implantations, electrode design, and others.

Acknowledgements

This work was financially supported by the European Commission FP7 (HEAR-EU European project #304857 http://www.heareu.eu) and the Swiss National Science Foundation (Nano-Tera initiative project title Hear-Restore). In addition, this work was partly supported by the Spanish Ministry of Economy and Competitiveness under the Maria de Maeztu Units of Excellence Programme (MDM-2015-0502). The authors also thank the SMIR (Kistler et al. 2013 / bibtex) team for hosting this data descriptor.

Access and download

To get access to the Cochlea Datadescriptor data, please either 1. Login to an existing account 2. or create an account on SMIR for free. Please choose the Cochlea.Datadescriptor as Research Unit on the registration page. You will receive your credential delivered to your email. Please allow some time for the request to be reviewed by the Cochlea Datadescriptor team.

You will find the folder CochleaDataDescriptor in Places >> SharedFolders in the left pane after logging in. Alternatively, you can follow the links below to the individual dataset.

Data

Folder Dataset URL DOI
AH1 AH1_1 https://www.smir.ch/objects/14129 10.22016/smir.o.14129
AH1_2 https://www.smir.ch/objects/14128 10.22016/smir.o.14128
AH1_3 https://www.smir.ch/objects/14123 10.22016/smir.o.14123
AH1_4 https://www.smir.ch/objects/14114 10.22016/smir.o.14114
AH1_5 https://www.smir.ch/objects/14109 10.22016/smir.o.14109
AH1_6 https://www.smir.ch/objects/14106 10.22016/smir.o.14106
AH1_7 https://www.smir.ch/objects/14097 10.22016/smir.o.14097
AH1_8 https://www.smir.ch/objects/14094 10.22016/smir.o.14094
AH1_9 https://www.smir.ch/objects/14001 10.22016/smir.o.14001
AH1_10 https://www.smir.ch/objects/13603 10.22016/smir.o.13603
AH1_11 https://www.smir.ch/objects/12307 10.22016/smir.o.12307
AH1_12 https://www.smir.ch/objects/12096 10.22016/smir.o.12096
AH1_13 https://www.smir.ch/objects/12091 10.22016/smir.o.12091
AH1_14 https://www.smir.ch/objects/12079 10.22016/smir.o.12079
AH1_15 https://www.smir.ch/objects/11688 10.22016/smir.o.11688
AH2 AH2_1 https://www.smir.ch/objects/122573 10.22016/smir.o.122573
AH2_2 https://www.smir.ch/objects/122572 10.22016/smir.o.122572
AH2_3 https://www.smir.ch/objects/122571 10.22016/smir.o.122571
AH2_4 https://www.smir.ch/objects/122570 10.22016/smir.o.122570
AH3 AH3_1 https://www.smir.ch/objects/122217 10.22016/smir.o.122217
AH3_2 https://www.smir.ch/objects/94571 10.22016/smir.o.94571
AH3_3 https://www.smir.ch/objects/94554 10.22016/smir.o.94554
AH3_4 https://www.smir.ch/objects/94097 10.22016/smir.o.94097
AL1 AL1_1 https://www.smir.ch/objects/121756 10.22016/smir.o.121756
AL1_2 https://www.smir.ch/objects/121755 10.22016/smir.o.121755
AL1_3 https://www.smir.ch/objects/121754 10.22016/smir.o.121754
AL1_4 https://www.smir.ch/objects/121753 10.22016/smir.o.121753
AL1_5 https://www.smir.ch/objects/121752 10.22016/smir.o.121752
AL1_6 https://www.smir.ch/objects/121751 10.22016/smir.o.121751
AL1_7 https://www.smir.ch/objects/121750 10.22016/smir.o.121750
AL1_8 https://www.smir.ch/objects/121749 10.22016/smir.o.121749
AL1_9 https://www.smir.ch/objects/121748 10.22016/smir.o.121748
AL1_10 https://www.smir.ch/objects/121747 10.22016/smir.o.121747
AL1_11 https://www.smir.ch/objects/121697 10.22016/smir.o.121697
AL1_12 https://www.smir.ch/objects/121695 10.22016/smir.o.121695
AL1_13 https://www.smir.ch/objects/121693 10.22016/smir.o.121693
AL1_14 https://www.smir.ch/objects/121691 10.22016/smir.o.121691
AL1_15 https://www.smir.ch/objects/121689 10.22016/smir.o.121689
AL2 AL2_1 https://www.smir.ch/objects/75021 10.22016/smir.o.75021
AL2_2 https://www.smir.ch/objects/75020 10.22016/smir.o.75020
AL2_3 https://www.smir.ch/objects/75019 10.22016/smir.o.75019
AL2_4 https://www.smir.ch/objects/75018 10.22016/smir.o.75018
AL3 AL3_1 https://www.smir.ch/objects/83082 10.22016/smir.o.83082
AL3_2 https://www.smir.ch/objects/83081 10.22016/smir.o.83081
AL3_3 https://www.smir.ch/objects/83080 10.22016/smir.o.83080
AL3_4 https://www.smir.ch/objects/83079 10.22016/smir.o.83079
AS1 AS1_1 https://www.smir.ch/objects/124077 10.22016/smir.o.124077
AS1_2 https://www.smir.ch/objects/122294 10.22016/smir.o.122294
AS1_3 https://www.smir.ch/objects/122293 10.22016/smir.o.122293
AS1_4 https://www.smir.ch/objects/80593 10.22016/smir.o.80593
AS1_5 https://www.smir.ch/objects/80591 10.22016/smir.o.80591
BH1 BH1_1 https://www.smir.ch/objects/74035 10.22016/smir.o.74035
BH1_2 https://www.smir.ch/objects/74030 10.22016/smir.o.74030
BH1_3 https://www.smir.ch/objects/74029 10.22016/smir.o.74029
BH1_4 https://www.smir.ch/objects/74028 10.22016/smir.o.74028
BH1_5 https://www.smir.ch/objects/74027 10.22016/smir.o.74027
BH1_6 https://www.smir.ch/objects/73958 10.22016/smir.o.73958
BH1_7 https://www.smir.ch/objects/73937 10.22016/smir.o.73937
BL1 BL1_1 https://www.smir.ch/objects/74034 10.22016/smir.o.74034
BL1_2 https://www.smir.ch/objects/74032 10.22016/smir.o.74032
BL1_3 https://www.smir.ch/objects/73964 10.22016/smir.o.73964
BL1_4 https://www.smir.ch/objects/73962 10.22016/smir.o.73962
BL1_5 https://www.smir.ch/objects/73960 10.22016/smir.o.73960
BL1_6 https://www.smir.ch/objects/73936 10.22016/smir.o.73936
BL1_7 https://www.smir.ch/objects/73934 10.22016/smir.o.73934
CH1 CH1_1 https://www.smir.ch/objects/13832 10.22016/smir.o.13832
CH1_2 https://www.smir.ch/objects/13733 10.22016/smir.o.13733
CH1_3 https://www.smir.ch/objects/12085 10.22016/smir.o.12085
CH1_4 https://www.smir.ch/objects/12084 10.22016/smir.o.12084
CH1_5 https://www.smir.ch/objects/12083 10.22016/smir.o.12083
CH1_6 https://www.smir.ch/objects/12082 10.22016/smir.o.12082
CH1_7 https://www.smir.ch/objects/12081 10.22016/smir.o.12081
CH1_8 https://www.smir.ch/objects/12080 10.22016/smir.o.12080
CH1_9 https://www.smir.ch/objects/11708 10.22016/smir.o.11708
CH1_10 https://www.smir.ch/objects/11683 10.22016/smir.o.11683
CH1_11 https://www.smir.ch/objects/11682 10.22016/smir.o.11682
CH1_12 https://www.smir.ch/objects/11681 10.22016/smir.o.11681
CH1_13 https://www.smir.ch/objects/11680 10.22016/smir.o.11680
CH1_14 https://www.smir.ch/objects/11679 10.22016/smir.o.11679
CH1_15 https://www.smir.ch/objects/11669 10.22016/smir.o.11669
CH2 CH2_1 https://www.smir.ch/objects/12090 10.22016/smir.o.12090
CH2_2 https://www.smir.ch/objects/12089 10.22016/smir.o.12089
CH2_3 https://www.smir.ch/objects/12088 10.22016/smir.o.12088
CH2_4 https://www.smir.ch/objects/12087 10.22016/smir.o.12087
CH2_5 https://www.smir.ch/objects/12086 10.22016/smir.o.12086
CS1 CS1_1 https://www.smir.ch/objects/123996 10.22016/smir.o.123996
CS1_2 https://www.smir.ch/objects/79073 10.22016/smir.o.79073
CS1_3 https://www.smir.ch/objects/78643 10.22016/smir.o.78643
CS1_4 https://www.smir.ch/objects/78641 10.22016/smir.o.78641
CS1_5 https://www.smir.ch/objects/78639 10.22016/smir.o.78639
CS1_6 https://www.smir.ch/objects/78633 10.22016/smir.o.78633
CS1_7 https://www.smir.ch/objects/78629 10.22016/smir.o.78629
CS1_8 https://www.smir.ch/objects/78627 10.22016/smir.o.78627
CS1_9 https://www.smir.ch/objects/78625 10.22016/smir.o.78625
CS1_10 https://www.smir.ch/objects/78621 10.22016/smir.o.78621
CS1_11 https://www.smir.ch/objects/78615 10.22016/smir.o.78615
CS1_12 https://www.smir.ch/objects/78613 10.22016/smir.o.78613
CS1_13 https://www.smir.ch/objects/78611 10.22016/smir.o.78611
CS2 CS2_1 https://www.smir.ch/objects/79075 10.22016/smir.o.79075
CS2_2 https://www.smir.ch/objects/78645 10.22016/smir.o.78645
CS2_3 https://www.smir.ch/objects/78635 10.22016/smir.o.78635
CS2_4 https://www.smir.ch/objects/78631 10.22016/smir.o.78631
D D_1 https://www.smir.ch/objects/124193 10.22016/smir.o.124193
D_2 https://www.smir.ch/objects/124191 10.22016/smir.o.124191
D_3 https://www.smir.ch/objects/122292 10.22016/smir.o.122292
D_4 https://www.smir.ch/objects/122291 10.22016/smir.o.122291
D_5 https://www.smir.ch/objects/122263 10.22016/smir.o.122263
D_6 https://www.smir.ch/objects/122260 10.22016/smir.o.122260
D_7 https://www.smir.ch/objects/122259 10.22016/smir.o.122259
D_8 https://www.smir.ch/objects/89045 10.22016/smir.o.89045
D_9 https://www.smir.ch/objects/29503 10.22016/smir.o.29503
D_10 https://www.smir.ch/objects/29498 10.22016/smir.o.29498
C_PDM https://www.smir.ch/objects/207472 10.22016/smir.o.207472
C_SDM https://www.smir.ch/objects/207473 10.22016/smir.o.207473